Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs192441928 chr5:154211019 G/T 8.5E-9 492 30.27 33.27 20.47 KM Plot
PRAD rs1965492 chr15:76773326 C/A 8.02E-5 494 28.3 31.87 30.87 KM Plot
PRAD rs1965599 chr14:32674802 A/G 3.35E-6 485 31.18 29.23 20.7 KM Plot
PRAD rs1969124 chr1:31832984 G/A 8.31E-6 493 30.97 31.28 22.87 KM Plot
PRAD rs1969874 chr1:201134762 G/A 6.57E-9 484 43.53 30.93 30.78 KM Plot
PRAD rs1978968 chr22:18448113 A/G 2.24E-7 494 26.37 32.15 30.8 KM Plot
PRAD rs1979082 chr2:107456716 A/C 0.000179 487 30.73 31.27 28.93 KM Plot
PRAD rs1979083 chr2:107456723 C/A 0.000179 486 30.73 31.27 32.63 KM Plot
PRAD rs1984013 chr21:36968345 C/T 4.06E-5 484 22.87 30.33 31.25 KM Plot
PRAD rs1984015 chr21:36968442 T/A 2.71E-5 485 26.15 30.55 31.23 KM Plot
PRAD rs199612741 chr19:53149058 C/A 1.37E-8 491 30.8 31.03 26.13 KM Plot
PRAD rs199790360 chr9:72918217 CTATAAT/C 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs199806259 chr7:6780655 A/AG 8.34E-5 484 30.93 29.45 38.33 KM Plot
PRAD rs200171191 chr9:72859160 AC/A 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs200181409 chr14:72253552 AT/ATT 4.35E-13 490 30.53 37.63 24.75 KM Plot